[INFO] cloning repository https://github.com/pombase/pombase-chado-json
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/pombase/pombase-chado-json" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpombase%2Fpombase-chado-json", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpombase%2Fpombase-chado-json'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 5bdedb31fcab86668c022a44b8102ba31b54e829
[INFO] testing pombase/pombase-chado-json against try#b8e88e5ddf5521a9f43ee3f62a702388c713e4bb for pr-155114
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpombase%2Fpombase-chado-json" "/workspace/builds/worker-3-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/pombase/pombase-chado-json
[INFO] finished tweaking git repo https://github.com/pombase/pombase-chado-json
[INFO] tweaked toml for git repo https://github.com/pombase/pombase-chado-json written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/pombase/pombase-chado-json on toolchain b8e88e5ddf5521a9f43ee3f62a702388c713e4bb
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b8e88e5ddf5521a9f43ee3f62a702388c713e4bb" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/pombase/pombase-chado-json already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b8e88e5ddf5521a9f43ee3f62a702388c713e4bb" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+b8e88e5ddf5521a9f43ee3f62a702388c713e4bb" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2efaeeb4c7c28edb44ed5e1c97f11b23a9fd61b648271a3acf5309b2866b97be
[INFO] running `Command { std: "docker" "start" "-a" "2efaeeb4c7c28edb44ed5e1c97f11b23a9fd61b648271a3acf5309b2866b97be", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2efaeeb4c7c28edb44ed5e1c97f11b23a9fd61b648271a3acf5309b2866b97be", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2efaeeb4c7c28edb44ed5e1c97f11b23a9fd61b648271a3acf5309b2866b97be", kill_on_drop: false }`
[INFO] [stdout] 2efaeeb4c7c28edb44ed5e1c97f11b23a9fd61b648271a3acf5309b2866b97be
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+b8e88e5ddf5521a9f43ee3f62a702388c713e4bb" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ef395e8b40d6244e3dbb1e3d6562129c76b5136831bc6f97881d3577423c1ead
[INFO] running `Command { std: "docker" "start" "-a" "ef395e8b40d6244e3dbb1e3d6562129c76b5136831bc6f97881d3577423c1ead", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
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[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 31s
[INFO] running `Command { std: "docker" "inspect" "ef395e8b40d6244e3dbb1e3d6562129c76b5136831bc6f97881d3577423c1ead", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ef395e8b40d6244e3dbb1e3d6562129c76b5136831bc6f97881d3577423c1ead", kill_on_drop: false }`
[INFO] [stdout] ef395e8b40d6244e3dbb1e3d6562129c76b5136831bc6f97881d3577423c1ead
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+b8e88e5ddf5521a9f43ee3f62a702388c713e4bb" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 108ca17b437608dddcd54b7f1cbcf549cb35bb2a575782345ddc310d4a2757f2
[INFO] running `Command { std: "docker" "start" "-a" "108ca17b437608dddcd54b7f1cbcf549cb35bb2a575782345ddc310d4a2757f2", kill_on_drop: false }`
[INFO] [stderr]    Compiling pombase-chado-json v228.13.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 28.05s
[INFO] running `Command { std: "docker" "inspect" "108ca17b437608dddcd54b7f1cbcf549cb35bb2a575782345ddc310d4a2757f2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "108ca17b437608dddcd54b7f1cbcf549cb35bb2a575782345ddc310d4a2757f2", kill_on_drop: false }`
[INFO] [stdout] 108ca17b437608dddcd54b7f1cbcf549cb35bb2a575782345ddc310d4a2757f2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+b8e88e5ddf5521a9f43ee3f62a702388c713e4bb" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 702eee2ec2ab441d8d60210dd7efc54198f5118bc8319f77595dc1b7549f828f
[INFO] running `Command { std: "docker" "start" "-a" "702eee2ec2ab441d8d60210dd7efc54198f5118bc8319f77595dc1b7549f828f", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.60s
[INFO] [stderr]      Running unittests src/pombase/lib.rs (/opt/rustwide/target/debug/deps/pombase-b0ecc12557cbe782)
[INFO] [stdout] 
[INFO] [stdout] running 6 tests
[INFO] [stdout] test bio::util::test_format_fasta ... ok
[INFO] [stdout] test bio::util::test_format_gff ... ok
[INFO] [stdout] test web::vec_set::test_insert ... ok
[INFO] [stdout] test web::vec_set::test_contains_superset ... ok
[INFO] [stdout] test bio::util::test_read_seq ... ok
[INFO] [stdout] test web::util::test_remove_first_string ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/pombase-chado-json.rs (/opt/rustwide/target/debug/deps/pombase_chado_json-fbbd6e30303ee5cc)
[INFO] [stderr]      Running unittests src/bin/pombase-chado-load.rs (/opt/rustwide/target/debug/deps/pombase_chado_load-8d54492b09e90c43)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/pombase-create-annotations.rs (/opt/rustwide/target/debug/deps/pombase_create_annotations-94fcbc78d968286a)
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/pombase-server.rs (/opt/rustwide/target/debug/deps/pombase_server-4570d550fa454aec)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]      Running tests/test_data_build.rs (/opt/rustwide/target/debug/deps/test_data_build-a947aa8958800c0f)
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test test_summary_row_equals ... ok
[INFO] [stdout] test test_compare_ext_part_with_config ... ok
[INFO] [stdout] test test_remove_redundant_summary_rows ... ok
[INFO] [stdout] test test_remove_redundant_summaries ... ok
[INFO] [stdout] test test_collect_ext_summary_genes ... ok
[INFO] [stdout] test test_merge_ext_part_ranges ... ok
[INFO] [stdout] test test_cmp_ont_annotation_detail ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/test_db_json.rs (/opt/rustwide/target/debug/deps/test_db_json-f673682aa935400f)
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test test_remove_first_u32 ... ok
[INFO] [stdout] test test_collect_duplicated_relations ... ok
[INFO] [stdout] test test_genotype_annotation ... ok
[INFO] [stdout] test test_terms ... ok
[INFO] [stdout] test test_locations ... ok
[INFO] [stdout] test test_make_publication_short ... ok
[INFO] [stdout] test test_term_gene_count ... ok
[INFO] [stdout] test test_gene_details ... ok
[INFO] [stderr]      Running tests/test_query.rs (/opt/rustwide/target/debug/deps/test_query-2bf3f33a54012254)
[INFO] [stdout] test test_gene_with ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.23s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test test_gene_subset ... ok
[INFO] [stdout] test test_gene_subset_invert ... ok
[INFO] [stdout] test test_termid ... ok
[INFO] [stdout] test test_output_options ... ok
[INFO] [stdout] test test_gene_subset_not_wildcard ... ok
[INFO] [stdout] test test_gene_subset_wildcard ... ok
[INFO] [stdout] test test_gene_gaf ... ok
[INFO] [stdout] test test_and_or_not ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.09s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/tests.rs (/opt/rustwide/target/debug/deps/tests-b47b280679dd4bab)
[INFO] [stderr]    Doc-tests pombase
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "702eee2ec2ab441d8d60210dd7efc54198f5118bc8319f77595dc1b7549f828f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "702eee2ec2ab441d8d60210dd7efc54198f5118bc8319f77595dc1b7549f828f", kill_on_drop: false }`
[INFO] [stdout] 702eee2ec2ab441d8d60210dd7efc54198f5118bc8319f77595dc1b7549f828f
